PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG048700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 190aa    MW: 22275.8 Da    PI: 9.1789
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG048700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.32e-2628119190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+YA e GFsvrk ++++ ++++ei  r+fvCs++g+r+ ++ k ++k+r++r  +r+gC a++++ ++k  g w+v+++  eH+He
  Pavir.7KG048700.1.p  28 EFYNNYAMEKGFSVRKCYMERDQTTKEICLRRFVCSRQGFRAAKHMKkANKKRKPRDISRCGCAARMVIAQNKeMGLWYVKDFIDEHTHE 117
                          6****************************************9887665799999*****************9999*************** PP

                 FAR1  89 la 90 
                          la
  Pavir.7KG048700.1.p 118 LA 119
                          96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-2528119IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVDLSIEALL DYQEIVSKTF RSEKEGYEFY NNYAMEKGFS VRKCYMERDQ TTKEICLRRF  60
VCSRQGFRAA KHMKKANKKR KPRDISRCGC AARMVIAQNK EMGLWYVKDF IDEHTHELAA  120
PDLACLLHSH RRISDEQKAD IIEMEIAGVR KHQIMNILEM QYGGYDKVRC VSRDAYNFCY  180
RYKLGTIAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466791.12e-84hypothetical protein SORBIDRAFT_01g014270
TrEMBLC5WS692e-84C5WS69_SORBI; Putative uncharacterized protein Sb01g014270
STRINGSb01g014270.17e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-22FAR1-related sequence 5